Information for 2-TATGCATGCA (Motif 8)

A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A
Reverse Opposite:
C G A T A C T G G A T C C G T A A C G T A C T G A G T C C G T A A C G T C T G A
p-value:1e-3
log p-value:-8.218e+00
Information Content per bp:1.883
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif13.79%
Number of Background Sequences with motif73.1
Percentage of Background Sequences with motif1.09%
Average Position of motif in Targets56.9 +/- 20.1bp
Average Position of motif in Background52.0 +/- 52.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---TATGCATGCA
GHATATKCAT---
 A C G T A C G T A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TATGCATGCA--
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TATGCATGCA
GAATATTCAT---
 A C G T A C G T A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TATGCATGCA--
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TATGCATGCA----
ATTTGCATACAATGG
 A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A A C G T A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TATGCATGCA----
NNCATTCATTCATNNN
 A C G T A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------TATGCATGCA
AYATGYATATGCATR--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TATGCATGCA
TTCATTTGCATAT-
 A C G T A C G T A C G T A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TATGCATGCA-
TNTAATTTGCATACNA
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TATGCATGCA-
TNTAATTTGCATACNA
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A A C G T C T A G A G T C C G T A A C G T C T A G A G T C C G T A A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A