Information for 1-GCTTCATAAT (Motif 5)

C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A G C A T A C G T C G T A A C G T C T A G C G T A C G T A A C T G A G T C
p-value:1e-5
log p-value:-1.166e+01
Information Content per bp:1.854
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif10.34%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets41.0 +/- 19.9bp
Average Position of motif in Background61.8 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0174.1_Sox30_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCTTCATAAT----
NCGTATTATAATCNTA
 A C G T A C G T C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PB0079.1_Sry_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCTTCATAAT----
TATAATTATAATATTC
 A C G T A C G T C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0176.1_Sox5_2/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCTTCATAAT------
-TATCATAATTAAGGA
 C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PB0069.1_Sox21_1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCTTCATAAT----
TTTAATTATAATTAAG
 A C G T A C G T C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

PB0064.1_Sox14_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCTTCATAAT----
GCTAATTATAATTATC
 A C G T A C G T C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PH0023.1_Dlx4/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCTTCATAAT-------
GCGCTATAATTACCGAC
 C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCTTCATAAT---
-----NTAATTGN
 C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCTTCATAAT---
-----NTAATTGG
 C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

EVX1/MA0887.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCTTCATAAT----
----GNTAATTANN
 C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCTTCATAAT---
-----TTAATTAN
 C T A G A G T C C G A T C G A T A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G