Information for 2-CAGGCAGGCAKGCAAC (Motif 2)

A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C
Reverse Opposite:
A C T G G A C T G A C T A C T G A G T C G T A C C G A T A C T G A G T C G T A C A C G T A T C G A G T C A G T C A G C T C T A G
p-value:1e-8
log p-value:-1.963e+01
Information Content per bp:1.702
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif13.79%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets32.8 +/- 10.5bp
Average Position of motif in Background59.3 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGGCAGGCAKGCAAC
CTGGCAGNCTGCCA--
 A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAGGCAKGCAAC
SCAGYCADGCATGAC--
 A C G T A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGGCAGGCAKGCAAC
TTGGCANNNTGCCAAG
 A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCAGGCAKGCAAC
TNNGGGCAG---------
 A C G T A C G T A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAGGCAGGCAKGCAAC
AAGGCAAGTGT-----
 A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCAGGCAKGCAAC
NGTGGGCAT---------
 A C G T A C G T A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CAGGCAGGCAKGCAAC
-TGGCACCATGCCAA-
 A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAGGCAGGCAKGCAAC---
---GCAGCCAAGCGTGACN
 A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGGCAGGCAKGCAAC
ACAGGAAGTG-------
 A C G T A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAGGCAGGCAKGCAAC--
GAGGGCAGCCAAGCGTGAC
 A C G T A G T C T C G A A C T G A C T G A T G C C G T A A C T G T A C G T A G C C G T A A C T G C T A G G T A C C G T A C T G A T G A C A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C