Information for 17-GTCTACTTAT (Motif 39)

A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A A C T G A C G T C G T A A C T G C G T A A G T C
p-value:1e-3
log p-value:-7.950e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets79.0 +/- 0.0bp
Average Position of motif in Background55.5 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0198.1_Zfp128_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTCTACTTAT---
TGTATATATATACC
 A C G T A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T
C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C

LBX1/MA0618.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GTCTACTTAT
--CTAATTAA
 A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTCTACTTAT
TGTTTACTTT-
 A C G T A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTCTACTTAT
TGTTTACTTT-
 A C G T A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTCTACTTAT---
-TCTATTTTTAGA
 A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A

MEF2D/MA0773.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTCTACTTAT---
-TCTATTTATAGN
 A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTCTACTTAT
--CTAATTAG
 A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T
A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCTACTTAT----
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTCTACTTAT
-NCTAATTA-
 A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTCTACTTAT
-ACCACTTAA
 A C T G A C G T A G T C A C G T C G T A A G T C A C G T A C G T C G T A A C G T
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A