Information for 19-CCGGCTGAGGGTC (Motif 29)

A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A G T C A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C T G A C T G
p-value:1e-3
log p-value:-9.048e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCGGCTGAGGGTC
CCCCCTGCTGTG----
 A C G T A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCGGCTGAGGGTC
CCTGCTGAGH---
 A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCGGCTGAGGGTC
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CCGGCTGAGGGTC--
-----NRRGGGTCTT
 A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCGGCTGAGGGTC
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCGGCTGAGGGTC
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCGGCTGAGGGTC
CACAGCGGGGGGTC
 A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCTGAGGGTC
NCGCAGCGGGGGGTC
 A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCTGAGGGTC
NCNCAGCGGGGGGTC
 A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCGGCTGAGGGTC
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A G T C A G T C A C T G A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A C G T A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T