Information for 7-RCTCTTCAACCNK (Motif 15)

C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T
Reverse Opposite:
G T C A A C G T A C T G T C A G A C G T C A G T A T C G C G T A C G T A A T C G C G T A A T C G A G C T
p-value:1e-5
log p-value:-1.253e+01
Information Content per bp:1.660
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif989.9
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets52.2 +/- 36.3bp
Average Position of motif in Background50.7 +/- 38.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RCTCTTCAACCNK
-GYCATCMATCAT
 C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-RCTCTTCAACCNK
TKCTGTTCCA----
 A C G T C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T
A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RCTCTTCAACCNK
RGCCATYAATCA-
 C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:RCTCTTCAACCNK
--TCATCAATCA-
 C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:RCTCTTCAACCNK-
--CCATCAATCAAA
 C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T A C G T
A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----RCTCTTCAACCNK
GARTGGTCATCGCCC--
 A C G T A C G T A C G T A C G T C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T
T A C G C G T A T C A G G A C T C T A G A C T G C A G T T A G C T C G A A C G T G T A C C T A G A G T C A G T C G A T C A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RCTCTTCAACCNK------
GCCTCCTCCMTCWGACTGKS
 A C G T C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

PB0203.1_Zfp691_2/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------RCTCTTCAACCNK
TACGAGACTCCTCTAAC--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--RCTCTTCAACCNK--
TCACCCATCAATAAACA
 A C G T A C G T C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RCTCTTCAACCNK
-GCCATAAATCA-
 C T G A A T G C C G A T A T G C G A C T A C G T A T G C G T C A G T C A A G T C A G T C C G T A A C G T
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T