Information for 7-GCAGGTGGCGCCC (Motif 9)

A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A G T C A C T G A G T C A G T C C G T A A G T C A G T C A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets84.0 +/- 0.0bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGTGGCGCCC
SDGCAGGTGCNS---
 A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTGGCGCCC
NNCAGGTGNN----
 A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCAGGTGGCGCCC-
GCGGAGGTGTCGCCTC
 A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

SNAI2/MA0745.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCAGGTGGCGCCC
AACAGGTGT-----
 A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCAGGTGGCGCCC----
-TTGGGGGCGCCCCTAG
 A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCAGGTGGCGCCC---
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

TCF3/MA0522.2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTGGCGCCC
NNCAGGTGTN----
 A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C
G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCAGGTGGCGCCC----
NNNNTTGGCGCCGANNN
 A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

ID4/MA0824.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTGGCGCCC
GACAGGTGTN----
 A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C
C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTGGCGCCC
NNCAGGTGCG----
 A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C T G A C T G A G T C A C T G A G T C A G T C A G T C
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G A C G T A C G T A C G T A C G T