Information for 6-TCCAAAAACACCA (Motif 8)

A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEF2C/MA0497.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCCAAAAACACCA
ATGCTAAAAATAGAA
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCCAAAAACACCA---
-CAAACAACAACACCT
 A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T A C G T
A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0116.1_Elf3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCCAAAAACACCA--
GTTCAAAAAAAAAATTC
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCCAAAAACACCA--
TGCCAAAATAAACANN
 A C G T A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCCAAAAACACCA
DCYAAAAATAGM-
 A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCCAAAAACACCA
KCCAAAAATAGC-
 A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCCAAAAACACCA---
--GCAAAACATTACTA
 A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCCAAAAACACCA
GCTAAAAATAGC-
 A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T

RREB1/MA0073.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TCCAAAAACACCA-------
CCCCAAACCACCCCCCCCCA
 A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TCCAAAAACACCA
CAATTGCAAAAATAT--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A C G T A C G T A C G T A A G T C C G T A A G T C A G T C C G T A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T