Information for 2-MCGAGKGGRC (Motif 3)

G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C
Reverse Opposite:
A C T G A G C T T G A C A G T C G T A C A G T C A G C T A G T C T C A G C A G T
p-value:1e-10
log p-value:-2.363e+01
Information Content per bp:1.729
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif15.12%
Number of Background Sequences with motif597.2
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets47.9 +/- 22.5bp
Average Position of motif in Background49.6 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:MCGAGKGGRC
TTGAGTGSTT
 G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0010.1_Egr1_1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-MCGAGKGGRC---
ANTGCGGGGGCGGN
 A C G T G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C A C G T A C G T A C G T
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-MCGAGKGGRC
BTBRAGTGSN-
 A C G T G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-MCGAGKGGRC
CTTGAGTGGCT
 A C G T G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-MCGAGKGGRC------
NNNAAGGGGGCGGGNNN
 A C G T G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----MCGAGKGGRC-
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A C G T G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--MCGAGKGGRC----
TGCGGAGTGGGACTGG
 A C G T A C G T G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-MCGAGKGGRC
CTYRAGTGSY-
 A C G T G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

EGR4/MA0733.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--MCGAGKGGRC----
AANTGCGTGGGCGTNN
 A C G T A C G T G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A C G T T C A G T A G C T C A G C A G T T C A G A C T G T C A G G T A C T C A G C A G T C T G A C T G A

PB0025.1_Glis2_1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--MCGAGKGGRC----
NTNTGGGGGGTCNNNA
 A C G T A C G T G T C A A G T C A C T G T C G A A C T G C A T G A C T G A C T G C T G A A G T C A C G T A C G T A C G T A C G T
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A