Information for 2-STGAGTTTAA (Motif 4)

T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A
Reverse Opposite:
C G A T A G C T T C G A C G T A C T G A G A T C C G A T G A T C C G T A A T G C
p-value:1e-7
log p-value:-1.685e+01
Information Content per bp:1.743
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif15.28%
Number of Background Sequences with motif838.5
Percentage of Background Sequences with motif1.73%
Average Position of motif in Targets48.8 +/- 32.4bp
Average Position of motif in Background48.5 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:STGAGTTTAA--
---NATTCAAAT
 T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A A C G T A C G T
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---STGAGTTTAA---
GGACTGAATTCATGCC
 A C G T A C G T A C G T T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A A C G T A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:STGAGTTTAA-
-----TTTAAT
 T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----STGAGTTTAA---
TNNNATGATTTCNNCNN
 A C G T A C G T A C G T A C G T T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A A C G T A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

Nr2e1/MA0676.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:STGAGTTTAA
TTGACTTTT-
 T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:STGAGTTTAA-----
-----TTTAATTGCN
 T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--STGAGTTTAA
CNGTGATTTN--
 A C G T A C G T T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---STGAGTTTAA---
NNNNTTTGTTTACNNT
 A C G T A C G T A C G T T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A A C G T A C G T A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:STGAGTTTAA-------
-TNAATTTTATTACCTN
 T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:STGAGTTTAA-------
-NGANTTTTATGGCTCN
 T A C G C G A T C T A G C G T A C T A G A G C T A C G T A G C T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T