Information for 1-TGTWCTWTTTTGATCC (Motif 1)

A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C
Reverse Opposite:
C T A G C T A G C G T A C A G T G T A C T G C A T C G A G T C A G T C A G C T A C G T A T C A G C G T A G T C A T A G C G T C A
p-value:1e-11
log p-value:-2.550e+01
Information Content per bp:1.692
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif6.94%
Number of Background Sequences with motif11.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets22.0 +/- 9.7bp
Average Position of motif in Background39.4 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.59
Offset:9
Orientation:forward strand
Alignment:TGTWCTWTTTTGATCC-
---------ATAATCCC
 A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

MEF2C/MA0497.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGTWCTWTTTTGATCC-
--TTCTATTTTTAGNNN
 A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C A C G T
A C G T A C G T C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TGTWCTWTTTTGATCC------
-----NTTGTTAATCCCTCTNN
 A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGTWCTWTTTTGATCC
---GCTATTTTTAGC-
 A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C
A C G T A C G T A C G T C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGTWCTWTTTTGATCC
NNGTANTGTTTTNC---
 A C G T A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C
G A C T C T G A C A T G C G A T G T C A T G C A G C A T A T C G G A C T G C A T G C A T G C A T A T C G T G A C A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGTWCTWTTTTGATCC
NNNNTTTTTTTTTNAAC
 A C G T A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGTWCTWTTTTGATCC
---KCTATTTTTRGH-
 A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C
A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TGTWCTWTTTTGATCC
GNATTTTTTTTTTGANC-
 A C G T A C G T A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C
C T A G G C T A C T G A A C G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C A G T C A T G T G C A T C G A G T A C A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:TGTWCTWTTTTGATCC
--------TTTAAT--
 A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.53
Offset:9
Orientation:forward strand
Alignment:TGTWCTWTTTTGATCC-
---------TTAATCCC
 A C G T A T C G A C G T G C A T A G T C C G A T C G A T A C G T C A G T A G C T A C G T A C T G G T C A C G A T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C