Information for 5-CAGAATAAATAAA (Motif 7)

A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A
Reverse Opposite:
A C G T A C G T C G A T C G T A A C G T C G A T C G A T G T C A A C G T A C G T A G T C A C G T A C T G
p-value:1e-11
log p-value:-2.693e+01
Information Content per bp:1.794
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif25.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets49.2 +/- 19.4bp
Average Position of motif in Background55.3 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0136.1_Phox2b/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAGAATAAATAAA----
CGGAATTAATTAATAGG
 A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T A C G T
T A G C T C A G A C T G G C T A T C G A G A C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A G C T C T G A A T C G A T C G

PH0108.1_Msx3/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAGAATAAATAAA---
CAAAACCAATTAATTT
 A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PH0088.1_Isl2/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAGAATAAATAAA---
CAAAATCAATTAATTT
 A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T
G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

PH0149.1_Pou3f4/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAGAATAAATAAA---
AATTAATTAATTAATTC
 A C G T A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0146.1_Pou3f1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAGAATAAATAAA---
AATTAATTAATTAATTC
 A C G T A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C

PH0091.1_Lhx1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGAATAAATAAA-----
-CGAATTAATTAATAATG
 A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C A G C G T A C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C A T G C T A G C T A G A C T A C T G

PH0093.1_Lhx3/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGAATAAATAAA-----
-GAAATTAATTAAATAAT
 A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T

PH0173.1_Uncx/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGAATAAATAAA----
CATAATTAATTAACGCG
 A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T A C G T
T G A C C T G A G C A T C T G A T G C A A G C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G T C T A C G T A G C A C T G

PH0142.1_Pou1f1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGAATAAATAAA---
GATTAATTAATTAAGTC
 A C G T A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

PH0095.1_Lhx5/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGAATAAATAAA-----
-CGAATTAATTAAATACT
 A G T C G T C A T A C G G T C A C G T A C A G T G C T A C G T A G T C A A C G T G C T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T