Information for 3-GGYCGGCAGGMAG (Motif 9)

A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G
Reverse Opposite:
G T A C A C G T A C T G A G T C A G T C A C G T A C T G A T G C A G T C A C T G C T A G A G T C G T A C
p-value:1e-6
log p-value:-1.424e+01
Information Content per bp:1.774
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.43%
Number of Background Sequences with motif78.5
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets40.5 +/- 14.9bp
Average Position of motif in Background48.3 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGYCGGCAGGMAG
TGGCAGNCTGCCAG
 A C G T A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GGYCGGCAGGMAG
NGTAGGTTGGCATNNN-
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGYCGGCAGGMAG
GGTTGGCAT----
 A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGYCGGCAGGMAG
TNNGGGCAG----
 A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGYCGGCAGGMAG
NGTGGGCAT----
 A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GGYCGGCAGGMAG--
-----ACAGGAAGTG
 A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGYCGGCAGGMAG
-CTTGGCAA----
 A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGYCGGCAGGMAG-----
GGAAGGAAGGAAGGAAGG
 A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGYCGGCAGGMAG--
-----ACAGGAAGTG
 A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGYCGGCAGGMAG
--CWGGCGGGAA-
 A C T G A C T G A G T C T G A C A C T G A T C G A G T C C G T A C T A G T A C G G T A C C G T A A C T G
A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T