Information for 3-RCCARCCAGT (Motif 11)

T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T
Reverse Opposite:
T G C A G A T C G A C T A C T G T C A G A G C T A C G T T C A G A C T G A G C T
p-value:1e-9
log p-value:-2.202e+01
Information Content per bp:1.523
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.37%
Number of Background Sequences with motif400.9
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets49.6 +/- 25.2bp
Average Position of motif in Background49.1 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:RCCARCCAGT--
ACTAGCCAATCA
 T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:RCCARCCAGT
-CCAATCAA-
 T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:RCCARCCAGT---
---AGCCAATCGG
 T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------RCCARCCAGT
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:RCCARCCAGT
-BCAGACWA-
 T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:RCCARCCAGT--
--TAATCAATTA
 T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T A C G T A C G T
A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A

PH0040.1_Hmbox1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---RCCARCCAGT----
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

POL002.1_INR/Jaspar

Match Rank:8
Score:0.62
Offset:5
Orientation:forward strand
Alignment:RCCARCCAGT---
-----TCAGTCTT
 T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:RCCARCCAGT------
AACAACCAATTAATTC
 T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RCCARCCAGT
HNRAATCAAT
 T C G A T A G C A G T C T G C A T C G A A G T C T G A C C T G A C T A G A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T