Information for 4-AATTATTGTYTTTMTG (Motif 5)

C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G
Reverse Opposite:
A G T C G T C A A C G T C T G A G T C A C G T A C T A G T C G A A T G C C G T A C G T A G A C T G C T A T C G A A C G T A C G T
p-value:1e-9
log p-value:-2.264e+01
Information Content per bp:1.702
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif20.83%
Number of Background Sequences with motif59.1
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets60.6 +/- 25.5bp
Average Position of motif in Background49.8 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ONECUT3/MA0757.1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AATTATTGTYTTTMTG
-NTTATTGATTTTTT-
 C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G
A C G T C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AATTATTGTYTTTMTG-----
----ANTAATTTTATGGCCGN
 C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:AATTATTGTYTTTMTG----
---------TTTTATGGCTN
 C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AATTATTGTYTTTMTG
-----TTGACTTTT--
 C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:AATTATTGTYTTTMTG--
--------NTTTTATGAC
 C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

SRY/MA0084.1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AATTATTGTYTTTMTG
----ATTGTTTAN---
 C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G
A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C A C G T A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AATTATTGTYTTTMTG
AANTTATTGTTCTNNA-
 A C G T C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AATTATTGTYTTTMTG
--TAATTGTTCTAAAC
 C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G
A C G T A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:AATTATTGTYTTTMTG---
-------DGWTTTATGRCN
 C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AATTATTGTYTTTMTG
CNNNTATTGTTCNNNNN
 A C G T C G T A T C G A A C G T C A G T C G T A C G A T A C G T A T C G A G C T A G T C A C G T A C G T A G C T G T C A A C G T A C T G
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A