Information for 3-TGTGCAMCACAACATT (Motif 4)

G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T
Reverse Opposite:
C G T A T C G A G C A T A C T G A C G T A C G T C T A G A C G T A C T G A C G T C A G T A C T G T A G C G C T A A T G C C G T A
p-value:1e-9
log p-value:-2.290e+01
Information Content per bp:1.659
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif20.83%
Number of Background Sequences with motif56.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets67.2 +/- 17.7bp
Average Position of motif in Background56.1 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGTGCAMCACAACATT
AACACCAAAACAAAGGA
 A C G T G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGTGCAMCACAACATT
ATATCAAAACAAAACA
 G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGTGCAMCACAACATT
--NWAACCACADNN--
 G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T
A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGTGCAMCACAACATT
---AAACCACAGC---
 G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGTGCAMCACAACATT-
--CAAACAACAACACCT
 G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T A C G T
A C G T A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0120.1_Foxj1_2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGTGCAMCACAACATT
ATGTCACAACAACAC-
 G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T

TBX20/MA0689.1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TGTGCAMCACAACATT
----CTTCACACCTA-
 G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T
A C G T A C G T A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGTGCAMCACAACATT
---AAACCACAGAN--
 G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T
A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T

MYF6/MA0667.1/Jaspar

Match Rank:9
Score:0.51
Offset:7
Orientation:forward strand
Alignment:TGTGCAMCACAACATT-
-------AACAGCTGTT
 G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C T C G A T C A G A G T C C G A T A T C G G A C T A G C T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TGTGCAMCACAACATT
-TTGCAACATN-----
 G A C T A T C G C A G T A C T G A G T C G C T A G T C A G T A C C G T A A G T C C G T A T G C A G T A C C G T A A G C T C G A T
A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C A C G T A C G T A C G T A C G T A C G T