Information for 16-GAGDGAGASAGWARMH (Motif 29)

T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T
Reverse Opposite:
C G T A C A T G A G T C A G C T C G A T A G T C A C G T A T C G A C G T A G T C A C G T G T A C G C T A T G A C C G A T A G T C
p-value:1e-4
log p-value:-1.129e+01
Information Content per bp:1.546
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif85.5
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets42.5 +/- 18.0bp
Average Position of motif in Background47.4 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAGDGAGASAGWARMH
AGGTGNCAGACAG-----
 A C G T A C G T T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAGDGAGASAGWARMH
AGGTGHCAGACA------
 A C G T A C G T T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGDGAGASAGWARMH
---CCAGACAG-----
 T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGDGAGASAGWARMH
CAAATCCAGACATCACA-
 A C G T A C G T T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGDGAGASAGWARMH
GAAAGTGAAAGT----
 T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGDGAGASAGWARMH
NNNACCGAGAGTNNN---
 A C G T A C G T T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGDGAGASAGWARMH
AGAAAGTGAAAGTGA--
 A C G T T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGDGAGASAGWARMH-
-AAACAGACAAAGGAAT
 T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAGDGAGASAGWARMH-
WNAGTCADAVTGAAACTN
 A C G T T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAGDGAGASAGWARMH
----TTGACAG-----
 T A C G C G T A A C T G C G A T C A T G T C G A A C T G T G C A T A G C T C G A A C T G G C T A T C G A C T A G G T A C G C A T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T