Information for 12-AGGAGTTAATTTGGGG (Motif 20)

C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G
Reverse Opposite:
A G T C A G T C A G T C A G T C C T G A G C T A C G T A A C G T A C G T C G T A C G T A A G T C C G A T A G T C A G T C A C G T
p-value:1e-6
log p-value:-1.584e+01
Information Content per bp:1.931
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 24.1bp
Average Position of motif in Background32.3 +/- 11.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGAGTTAATTTGGGG
AGGTGTTAAT------
 C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0154.1_Prrx1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGAGTTAATTTGGGG-
ANNAGTTAATTAGTTAN
 C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G A C G T
T C G A A T C G G A C T G T C A T C A G A G C T G A C T C T G A C T G A A G C T A C G T C T G A C T A G A G C T C A G T T G C A A T G C

NOTO/MA0710.1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGGAGTTAATTTGGGG
----NNTAATTAGN--
 C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G
A C G T A C G T A C G T A C G T T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T A C G T

PH0156.1_Rax/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGGAGTTAATTTGGGG-
NNGCGCTAATTAGTGCA
 C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G A C G T
C T A G A C G T A T C G T A G C C T A G A G T C G A C T T C G A C T G A A G C T A C G T C T G A T C A G A G C T T A C G A T G C G C T A

Dlx1/MA0879.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGGAGTTAATTTGGGG
----NNTAATTANN--
 C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G
A C G T A C G T A C G T A C G T T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G A C G T A C G T

mix-a/MA0621.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGGAGTTAATTTGGGG
---AATTAATTAGT--
 C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G
A C G T A C G T A C G T C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T A C G T A C G T

ESX1/MA0644.1/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGGAGTTAATTTGGGG
----GNTAATTGGN--
 C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G
A C G T A C G T A C G T A C G T C A T G A G C T C G A T C T G A C T G A C A G T A G C T C T A G C T A G A G C T A C G T A C G T

RREB1/MA0073.1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGTTAATTTGGGG
NGGGGGGGGGTGGTTTGGGG
 A C G T A C G T A C G T A C G T C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G
A C G T A T C G C A T G A C T G C A T G A C T G A C T G A C T G A C T G A C T G A C G T A C T G C A T G A C G T A C G T A C G T A C T G A C T G A C T G A C T G

LHX2/MA0700.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGGAGTTAATTTGGGG
----NNTAATTAGN--
 C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G
A C G T A C G T A C G T A C G T T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T A C G T A C G T

GSX1/MA0892.1/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGGAGTTAATTTGGGG
----NNTAATTAGN--
 C G T A A C T G C T A G C G T A A C T G A C G T A C G T C G T A C G T A A C G T C A G T A G C T A C T G A C T G A C T G C T A G
A C G T A C G T A C G T A C G T C G A T A G C T G C A T C G T A C G T A A G C T C A G T C T G A T A C G C A T G A C G T A C G T