Information for 11-GGGAGAVBTCHCTTGG (Motif 19)

C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
Reverse Opposite:
A G T C G T A C C T G A C T G A A C T G C A T G A C T G G T C A T A G C A C G T A C G T A G T C A G C T A G T C A G T C A G T C
p-value:1e-6
log p-value:-1.592e+01
Information Content per bp:1.724
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets19.8 +/- 2.7bp
Average Position of motif in Background47.5 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGGAGAVBTCHCTTGG
GGGGGAATCCCC----
 C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGGAGAVBTCHCTTGG
AGGGGAATCCCCT---
 C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGGAGAVBTCHCTTGG
AGGGGATTCCCCT---
 C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGGAGAVBTCHCTTGG
NGGGGATTTCCC----
 C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGGAGAVBTCHCTTGG
TGGGGA----------
 C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGGAGAVBTCHCTTGG
GGGCGATGACCAYTC-
 C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
C T A G T A C G T C A G A G T C A C T G T G C A A G C T A C T G G T C A G T A C G A T C C T G A A G T C A C G T A T G C A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GGGAGAVBTCHCTTGG
GACAGAGATATCAGTGT-
 A C G T A C G T C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----GGGAGAVBTCHCTTGG
TTGACCGAGAATTCC-----
 A C G T A C G T A C G T A C G T C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:GGGAGAVBTCHCTTGG
--GGAAATCCCC----
 C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T

EBF1/MA0154.3/Jaspar

Match Rank:10
Score:0.48
Offset:6
Orientation:reverse strand
Alignment:GGGAGAVBTCHCTTGG----
------ANTCCCTNGGGAAT
 C T A G C T A G A C T G C T G A C T A G C G T A T A C G A C T G A C G T A G T C G A T C G T A C A G C T A G C T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T