Information for 2-AGARADGAAWACAAYA (Motif 5)

C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A
Reverse Opposite:
C G A T T C G A C G A T A C G T A T C G A G C T C G T A G C A T A C G T T A G C G A T C C G A T A G T C A C G T A T G C G C A T
p-value:1e-10
log p-value:-2.459e+01
Information Content per bp:1.680
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif5.34%
Number of Background Sequences with motif39.8
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets44.1 +/- 20.0bp
Average Position of motif in Background49.8 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0123.1_Foxl1_2/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AGARADGAAWACAAYA--
--ATATCAAAACAAAACA
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A A C G T A C G T
A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0062.1_Sox12_1/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AGARADGAAWACAAYA-
---NTTNAGAACAATTA
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A A C G T
A C G T A C G T A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0073.1_Sox7_1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGARADGAAWACAAYA--------
--AATAAAGAACAATAGAATTTCA
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

SRY/MA0084.1/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:forward strand
Alignment:AGARADGAAWACAAYA
------GTAAACAAT-
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGARADGAAWACAAYA---
---NNTNANAACAATTNNA
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AGARADGAAWACAAYA-----
----TAGTGAACAATAGATTT
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AGARADGAAWACAAYA----
----TTTAGAACAATAAAAT
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0074.1_Sox8_1/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AGARADGAAWACAAYA-----
----TNNAGAACAATANATNN
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PB0122.1_Foxk1_2/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGARADGAAWACAAYA---
----CAAACAACAACACCT
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGARADGAAWACAAYA----
----TTAAGAACAATAAATT
 C G T A T A C G G T C A C T A G C G T A C T A G A T C G C G T A C G T A G C A T C T G A A T G C C G T A C G T A A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T