Information for 4-GAGAAGGGWCAGT (Motif 8)

A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T
Reverse Opposite:
G T C A A T G C A C G T A C T G C G T A G T A C A G T C A G T C A C G T A C G T A G T C A C G T A T G C
p-value:1e-10
log p-value:-2.308e+01
Information Content per bp:1.832
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.6 +/- 21.6bp
Average Position of motif in Background59.1 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGAAGGGWCAGT
GGAGAAAGGTGCGA
 A C G T A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGAAGGGWCAGT
ANGNAAAGGTCA--
 A C G T A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGAAGGGWCAGT
--CAAAGGTCAG-
 A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGAAGGGWCAGT--
AGAGCGGGGTCAAGTA
 A C G T A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GAGAAGGGWCAGT
-----AGGTCA--
 A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAGAAGGGWCAGT
---AGRGGTCA--
 A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T
A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGAAGGGWCAGT
--CCAGGAACAG-
 A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGAAGGGWCAGT--
CGCGCCGGGTCACGTA
 A C G T A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAGAAGGGWCAGT
---TRAGGTCA--
 A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAGAAGGGWCAGT
----AAGGTCAC-
 A T C G G T C A A C T G G T C A C G T A C T A G A C T G A C T G C G A T A G T C C G T A A T C G C A G T
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T