Information for 24-AGAACATWCACGC (Motif 42)

C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C
Reverse Opposite:
T C A G A G T C T A C G A C G T A C T G C G T A G T C A A C G T C T A G A C G T C A G T A G T C C G A T
p-value:1e-7
log p-value:-1.808e+01
Information Content per bp:1.765
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif26.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets52.5 +/- 20.7bp
Average Position of motif in Background52.4 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGAACATWCACGC---
GACCACATTCATACAAT
 A C G T C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGAACATWCACGC----
---ACATTCATGACACG
 C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGAACATWCACGC-
ATGAATATTCATGAG
 A C G T C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGAACATWCACGC
-GHATATKCAT--
 C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGAACATWCACGC
-GAATATTCAT--
 C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGAACATWCACGC
CCAGGAACAG------
 A C G T A C G T A C G T C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:AGAACATWCACGC-
--------CACGCA
 C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGAACATWCACGC
-----AGTCACGC
 C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C
A C G T A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGAACATWCACGC
NTTNAGAACAATTA---
 A C G T A C G T A C G T A C G T C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGAACATWCACGC--
-----TBGCACGCAA
 C G T A A C T G G C T A C G T A A G T C C G T A C A G T C G A T A G T C C G T A A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A