Information for 16-CGTCTATAAA (Motif 41)

G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A T G C C A T G
p-value:1e-8
log p-value:-1.856e+01
Information Content per bp:1.873
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif48.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets54.4 +/- 24.2bp
Average Position of motif in Background55.2 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CGTCTATAAA--------
---GTATAAAAGGCGGGG
 G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CGTCTATAAA--------
---GTATAAAAGGCGGGG
 G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CGTCTATAAA---
-GNCTATAAAAGG
 G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A A C G T A C G T A C G T
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CGTCTATAAA---
-NGYCATAAAWCH
 G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

MEF2A/MA0052.3/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGTCTATAAA----
--TCTAAAAATAGA
 G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A

MEF2D/MA0773.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CGTCTATAAA----
--ACTATAAATAGA
 G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGTCTATAAA-----
CTACCAATAAAATTCT
 A C G T G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGTCTATAAA-
-NGCAATTAAA
 G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A A C G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

SMAD3/MA0795.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGTCTATAAA
CGTCTAGACA
 G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CGTCTATAAA--
--CCAATAAAAC
 G T A C T A C G A C G T A G T C A C G T G T C A A C G T G T C A C G T A C G T A A C G T A C G T
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C