Information for 5-GYCATAAARH (Motif 4)

T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T
Reverse Opposite:
C G T A A G C T C G A T C G A T C G A T C G T A A C G T C A T G C T A G A T G C
p-value:1e-20
log p-value:-4.824e+01
Information Content per bp:1.712
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif8.41%
Number of Background Sequences with motif972.1
Percentage of Background Sequences with motif2.00%
Average Position of motif in Targets52.1 +/- 26.5bp
Average Position of motif in Background50.5 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:GYCATAAARH
GTCATAAAAN
 T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:forward strand
Alignment:GYCATAAARH
GCAATAAAA-
 T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--GYCATAAARH
AAGCCATAAAA-
 A C G T A C G T T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GYCATAAARH
GGTAATAAAAA
 A C G T T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GYCATAAARH-
NGYCATAAAWCH
 A C G T T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----GYCATAAARH--
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---GYCATAAARH---
AGAGCCATAAAATTCG
 A C G T A C G T A C G T T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GYCATAAARH
GCAATAAAAA
 T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GYCATAAARH
CCAATAAAAA
 T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-GYCATAAARH
NCYAATAAAA-
 A C G T T A C G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A G C A T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T