Information for 6-CAGAGCAATAAAA (Motif 8)

G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G A G T C A C G T T A G C A C G T A C T G
p-value:1e-11
log p-value:-2.609e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.6 +/- 27.0bp
Average Position of motif in Background51.1 +/- 8.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CAGAGCAATAAAA----
-AGAGCCATAAAATTCG
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CAGAGCAATAAAA
--AAGCCATAAAA
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.77
Offset:3
Orientation:forward strand
Alignment:CAGAGCAATAAAA-
---GGTAATAAAAA
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.76
Offset:4
Orientation:forward strand
Alignment:CAGAGCAATAAAA
----GCAATAAAA
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A
A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.76
Offset:4
Orientation:forward strand
Alignment:CAGAGCAATAAAA-
----GCAATAAAAA
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.76
Offset:4
Orientation:forward strand
Alignment:CAGAGCAATAAAA-
----GTCATAAAAN
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.74
Offset:4
Orientation:forward strand
Alignment:CAGAGCAATAAAA-
----CCAATAAAAA
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAGAGCAATAAAA----
-CTACCAATAAAATTCT
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.74
Offset:4
Orientation:forward strand
Alignment:CAGAGCAATAAAA-
----CCAATAAAAA
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAGAGCAATAAAA-----
-AATGCAATAAAATTTAT
 G T A C C G T A A C T G C G T A A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T