Information for 5-CACAAMTGTTTTA (Motif 6)

A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A
Reverse Opposite:
A C G T C T G A C G T A C G T A C T G A A T G C T C G A A C G T A C G T C G A T C T A G A C G T A C T G
p-value:1e-15
log p-value:-3.484e+01
Information Content per bp:1.748
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.2 +/- 23.3bp
Average Position of motif in Background49.5 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CACAAMTGTTTTA
-NTAATBNAATTA
 A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A
A C G T G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

PH0126.1_Obox6/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CACAAMTGTTTTA---
-AAAAACGGATTATTG
 A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A A C G T A C G T A C G T
A C G T G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

T/MA0009.2/Jaspar

Match Rank:3
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CACAAMTGTTTTA
TCACACCTAGGTGTGA
 A C G T A C G T A C G T A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A
G A C T T G A C C T G A A G T C T C G A G A T C T G A C G A C T C G T A A C T G C T A G A G C T C T A G G A C T A C T G C T G A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CACAAMTGTTTTA---
--AAAAACCATTAAGG
 A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A A C G T A C G T A C G T
A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PH0088.1_Isl2/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CACAAMTGTTTTA----
-CAAAATCAATTAATTT
 A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CACAAMTGTTTTA-
----AAACMATTAN
 A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A A C G T
A C G T A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CACAAMTGTTTTA-----
------DGWTTTATGRCN
 A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PB0187.1_Tcf7_2/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CACAAMTGTTTTA-------
-----CCGTATTATAAACAA
 A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CACAAMTGTTTTA
RNAACAATGG-----
 A C G T A C G T A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CACAAMTGTTTTA
CACTAATT-----
 A G T C G T C A A G T C C G T A C G T A G T C A A G C T T A C G A G C T G C A T A C G T A G C T C G T A
G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T