Information for 21-TGAACMCAGGCCAAAT (Motif 28)

A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T
Reverse Opposite:
C G T A A C G T C G A T A C G T A C T G A C T G A T G C G A T C A C G T C A T G C A T G C A T G A C G T A C G T A G T C C T G A
p-value:1e-8
log p-value:-1.984e+01
Information Content per bp:1.737
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif13.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.0 +/- 20.9bp
Average Position of motif in Background53.4 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.66
Offset:8
Orientation:reverse strand
Alignment:TGAACMCAGGCCAAAT
--------TGCCAA--
 A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.64
Offset:6
Orientation:forward strand
Alignment:TGAACMCAGGCCAAAT
------CGTGCCAAG-
 A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGAACMCAGGCCAAAT
TGGCACCATGCCAA--
 A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TGAACMCAGGCCAAAT
------GGTGCCAAGT
 A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:forward strand
Alignment:TGAACMCAGGCCAAAT
-------ATGCCAACC
 A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.55
Offset:8
Orientation:forward strand
Alignment:TGAACMCAGGCCAAAT--
--------AGCCAATCGG
 A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TGAACMCAGGCCAAAT-
-----ACTAGCCAATCA
 A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGAACMCAGGCCAAAT
TTGGCANNNTGCCAAG-
 A C G T A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TGAACMCAGGCCAAAT----
----ACTATGCCAACCTACC
 A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------TGAACMCAGGCCAAAT
NNGAGGTTACTNNAGGTCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G C G T A G T C A G A T C G T A C G A T C G T C A C A T G A T C G A G T C A G T C C G T A C G T A G T C A G A C T
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A A C G T A C G T A C G T