Information for 19-TTGTACAGSACAATRT (Motif 25)

A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T
Reverse Opposite:
C G T A A G C T G T C A A C G T A C G T A C T G A C G T A T C G A G T C A C G T A C T G C G A T C T G A G T A C C G T A C T G A
p-value:1e-9
log p-value:-2.084e+01
Information Content per bp:1.746
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.3 +/- 16.2bp
Average Position of motif in Background48.9 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:TTGTACAGSACAATRT-
--------GACAATGNN
 A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TTGTACAGSACAATRT
ATTTGCATAACAAAG-
 A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T

MTF1/MA0863.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TTGTACAGSACAATRT
TTTGCACACGGCAC---
 A C G T A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C A C G T A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TTGTACAGSACAATRT----
---TNNAGAACAATANATNN
 A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TTGTACAGSACAATRT
ATTTGCATAACAATG-
 A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TTGTACAGSACAATRT---
--TCACGGAACAATAGGTG
 A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T A C G T A C G T A C G T
A C G T A C G T G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TTGTACAGSACAATRT---
---TTAAGAACAATAAATT
 A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TTGTACAGSACAATRT
--NTTNAGAACAATTA
 A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T
A C G T A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TTGTACAGSACAATRT
---NWAACCACADNN-
 A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T
A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TTGTACAGSACAATRT
---NAAACCACAG---
 A G C T A C G T A C T G A G C T C G T A G T A C C G T A T C A G A T G C C G T A G T A C C G T A T C G A A C G T C T G A C G A T
A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T