Information for 7-CCACCAATGATTTAAA (Motif 9)

G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T C G T A C G T A C T G A C A G T A T G C G C T A A C G T A C G T A C T G A C T G A G C T A C T G C A T G
p-value:1e-10
log p-value:-2.517e+01
Information Content per bp:1.715
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif28.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets58.3 +/- 27.5bp
Average Position of motif in Background52.3 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:CCACCAATGATTTAAA-
--------NATTCAAAT
 G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PH0088.1_Isl2/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCACCAATGATTTAAA--
--CAAAATCAATTAATTT
 G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A A C G T A C G T
A C G T A C G T G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:CCACCAATGATTTAAA----
----------TTTGAAACCG
 G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCACCAATGATTTAAA
ACTAGCCAATCA------
 A C G T A C G T G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCACCAATGATTTAAA
GAAGATCAATCACTTA--
 A C G T A C G T G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CCACCAATGATTTAAA
AAATGGACCAATCAG-----
 A C G T A C G T A C G T A C G T G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCACCAATGATTTAAA
-NAACAAT--------
 G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A
A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CCACCAATGATTTAAA
TTAAGAACAATAAATT---
 A C G T A C G T A C G T G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCACCAATGATTTAAA
CCATCAATCAAA----
 G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T A C G T A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CCACCAATGATTTAAA----
---CGAATTAATTAAATACT
 G T A C T A G C C T G A T A G C A G T C G T C A G T C A C G A T T A C G G T C A A G C T C G A T C G A T G T C A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T