Information for 3-TTTTATDGBT (Motif 3)

G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T
Reverse Opposite:
C T G A T C A G A G T C G C A T T C G A C G A T T G C A C G T A G T C A C T G A
p-value:1e-29
log p-value:-6.792e+01
Information Content per bp:1.496
Number of Target Sequences with motif127.0
Percentage of Target Sequences with motif16.10%
Number of Background Sequences with motif1157.6
Percentage of Background Sequences with motif5.07%
Average Position of motif in Targets51.7 +/- 26.9bp
Average Position of motif in Background49.7 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TTTTATDGBT
TTTTATTGC-
 G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TTTTATDGBT-
TTTTATGGCTN
 G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATDGBT
NTTTTATTACN
 A C G T G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATDGBT
NTTTTATGAC-
 A C G T G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TTTTATDGBT
TTTTATTRGN
 G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATDGBT
DGWTTTATGRCN
 A C G T A C G T G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATDGBT
TTTTTATTGG-
 A C G T G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATDGBT
NTTTTATTGG-
 A C G T G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATDGBT
NTTTTATTGG-
 A C G T G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.86
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATDGBT--
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T G A C T C A G T G C A T A C G T G C T A A G C T C G T A T C A G A G T C G A C T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T