Information for 12-GMAWWWAAWGGSA (Motif 14)

C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
Reverse Opposite:
A C G T A T G C A G T C A G T C C G A T A C G T A C G T C G A T C G T A C G A T A C G T A C G T A G T C
p-value:1e-9
log p-value:-2.269e+01
Information Content per bp:1.820
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.3 +/- 20.5bp
Average Position of motif in Background68.1 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GMAWWWAAWGGSA
TAGGTAATAAAATTCA
 A C G T A C G T A C G T C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GMAWWWAAWGGSA
ATTTGCATACAATGG--
 A C G T A C G T A C G T A C G T C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GMAWWWAAWGGSA
NGCAATTAAA----
 A C G T C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GMAWWWAAWGGSA
GCAATAAAAA---
 C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GMAWWWAAWGGSA
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GMAWWWAAWGGSA
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GMAWWWAAWGGSA
GGTAATAAAAA---
 A C G T C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GMAWWWAAWGGSA
GNCTATAAAAGG--
 A C G T C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GMAWWWAAWGGSA
-AAAACAAAGG--
 C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GMAWWWAAWGGSA
GCAATAAAA----
 C T A G G T C A C G T A C G T A C G A T C G T A C G T A C G T A C G T A A C T G A C T G A T C G C G T A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T