Information for 4-CGSAGGCTGCGSR (Motif 5)

G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
Reverse Opposite:
A G T C T A C G G T A C C T A G A T G C G C T A A C T G G T A C A G T C A C G T A T C G A T G C A C T G
p-value:1e-13
log p-value:-3.190e+01
Information Content per bp:1.656
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.55%
Number of Background Sequences with motif270.4
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets49.3 +/- 24.8bp
Average Position of motif in Background49.4 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:1
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGSAGGCTGCGSR
AGCCTCAGGCA-----
 A C G T A C G T A C G T G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGSAGGCTGCGSR
-CCAGACAG----
 G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGSAGGCTGCGSR
-TGAGTCAGCA--
 G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGSAGGCTGCGSR
CGCCTCAGGCA-----
 A C G T A C G T A C G T G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGSAGGCTGCGSR
AGCCTCAGGCA-----
 A C G T A C G T A C G T G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGSAGGCTGCGSR
TGCTGASTCAGC---
 A C G T A C G T G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
A C G T A T C G T G A C G C A T C A T G C G T A T A G C G A C T G A T C C T G A A T C G A G T C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGSAGGCTGCGSR
-BCAGACWA----
 G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGSAGGCTGCGSR
TGCGCAGGCGC----
 A C G T A C G T G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CGSAGGCTGCGSR
-CCAGACRSVB--
 G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

MAFG/MA0659.1/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CGSAGGCTGCGSR--
AAATTGCTGAGTCAGCATATT
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C T A C G T A G C G T C A C T A G C A T G A G T C C G A T A T C G A G T C C A T G A T G C T C A G A C G T A C G T
C G T A C G T A G C T A C G A T G A C T T A C G G T A C G A C T C A T G G C T A A T C G C A G T G T A C C T G A C A T G A T G C C T G A G C A T C G T A G C A T G C A T