Motif 25

Information for 14-CGGGTTAACC (Motif 25)

Reverse Opposite:

p-value:	1e-6
log p-value:	-1.559e+01
Information Content per bp:	1.665
Number of Target Sequences with motif	27.0
Percentage of Target Sequences with motif	3.30%
Number of Background Sequences with motif	489.7
Percentage of Background Sequences with motif	1.02%
Average Position of motif in Targets	59.0 +/- 28.8bp
Average Position of motif in Background	49.3 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)	-0.5
Multiplicity (# of sites on avg that occur together)	1.08
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

PB0081.1_Tcf1_1/Jaspar

Match Rank:	1
Score:	0.67
Offset:	-2
Orientation:	forward strand
Alignment:	--CGGGTTAACC----- ACTTAGTTAACTAAAAA

PH0015.1_Crx/Jaspar

Match Rank:	2
Score:	0.66
Offset:	-5
Orientation:	forward strand
Alignment:	-----CGGGTTAACC- CGTTGGGGATTAGCCT

PH0167.1_Tcf1/Jaspar

Match Rank:	3
Score:	0.66
Offset:	-2
Orientation:	forward strand
Alignment:	--CGGGTTAACC----- CCTTAGTTAACTAAAAT

MYBL2/MA0777.1/Jaspar

Match Rank:	4
Score:	0.64
Offset:	-2
Orientation:	reverse strand
Alignment:	--CGGGTTAACC--- GACNGTTTAACGGTT

PB0109.1_Bbx_2/Jaspar

Match Rank:	5
Score:	0.64
Offset:	-3
Orientation:	reverse strand
Alignment:	---CGGGTTAACC---- NNNNCTGTTAACNNTNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:	6
Score:	0.63
Offset:	1
Orientation:	reverse strand
Alignment:	CGGGTTAACC -GGATTAGC-

OTX1/MA0711.1/Jaspar

Match Rank:	7
Score:	0.61
Offset:	0
Orientation:	reverse strand
Alignment:	CGGGTTAACC CGGATTAN--

OTX2/MA0712.1/Jaspar

Match Rank:	8
Score:	0.61
Offset:	0
Orientation:	reverse strand
Alignment:	CGGGTTAACC NGGATTAA--

PITX3/MA0714.1/Jaspar

Match Rank:	9
Score:	0.61
Offset:	0
Orientation:	reverse strand
Alignment:	CGGGTTAACC GGGATTANN-

Pitx1/MA0682.1/Jaspar

Match Rank:	10
Score:	0.61
Offset:	0
Orientation:	reverse strand
Alignment:	CGGGTTAACC GGGATTAA--