Information for 10-TCAGCWGSCAGGA (Motif 17)

A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A
Reverse Opposite:
A G C T A T G C A G T C A C G T T A C G A T C G A T G C C G T A T C A G T A G C A C G T A C T G T C G A
p-value:1e-10
log p-value:-2.510e+01
Information Content per bp:1.698
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.91%
Number of Background Sequences with motif435.5
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets47.0 +/- 27.2bp
Average Position of motif in Background51.1 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:TCAGCWGSCAGGA
------CACAGN-
 A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TCAGCWGSCAGGA
----TTGCCAAG-
 A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TCAGCWGSCAGGA
TCACGTGACCGG-
 A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A
A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TCAGCWGSCAGGA
----TTGACAGC-
 A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A
A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCAGCWGSCAGGA
NVCAGCTGBBNN--
 A C G T A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.55
Offset:7
Orientation:forward strand
Alignment:TCAGCWGSCAGGA----
-------ACAGGAAGTG
 A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TCAGCWGSCAGGA---
------ANCAGGATGT
 A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

POL002.1_INR/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TCAGCWGSCAGGA
TCAGTCTT-----
 A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:9
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TCAGCWGSCAGGA-----
------NDCAGGAARTNN
 A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCAGCWGSCAGGA----
--ATTTCCCAGVAKSCY
 A G C T A G T C G T C A A T C G A G T C C G A T T A C G T A G C A T G C G T C A A C T G A T C G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C