Information for 7-GTTGCCAAGG (Motif 16)

A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G
Reverse Opposite:
A T G C G T A C C G A T A G C T T A C G A T C G G T A C T C G A C G T A A G T C
p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.831
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif92.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets54.8 +/- 25.9bp
Average Position of motif in Background56.9 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GTTGCCAAGG----
GTTGCCATGGNAAC
 A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCAAGG--
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCAAGG
CTGTTGCTAGGS
 A C G T A C G T A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.79
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGCCAAGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCAAGG---
NGTTGCCATGGCAA
 A C G T A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCAAGG---
GGTTGCCATGGCAA
 A C G T A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:7
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCAAGG--
NCCGTTGCTANGNGN
 A C G T A C G T A C G T A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GTTGCCAAGG
GGTGCCAAGT
 A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GTTGCCAAGG
-TTGCCAAG-
 A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTTGCCAAGG-----
GTTGCCATGGCAACM
 A C T G C G A T A G C T A C T G A T G C A T G C T C G A C G T A C A T G A T C G A C G T A C G T A C G T A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C