Information for 4-TTTATTGCAG (Motif 12)

A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
Reverse Opposite:
A T G C A C G T A T C G A G T C C G T A G T C A A C G T G T C A T C G A C G T A
p-value:1e-12
log p-value:-2.854e+01
Information Content per bp:1.845
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif73.9
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets44.1 +/- 26.2bp
Average Position of motif in Background50.2 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGCAG
TTTTATTGC--
 A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGCAG
TTTTATGGCTN
 A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCAG
NTTTTATGAC--
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCAG
NTTTTATTACN-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCAG
TTTTTATTGG--
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCAG
TTTTTATTGC--
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCAG
NTTTTATTGG--
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCAG
NTTTTATTGG--
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTTATTGCAG
DGWTTTATGRCN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TTTATTGCAG--
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C A T A C T G T A G C C G T A A T C G A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T