Information for 3-GCACCACACATTT (Motif 6)

A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T
Reverse Opposite:
G T C A C T G A G T C A A C G T C A T G C G A T A T C G C G A T A C T G T A C G A C G T A C T G A G T C
p-value:1e-12
log p-value:-2.774e+01
Information Content per bp:1.715
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.40%
Number of Background Sequences with motif117.3
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets55.3 +/- 26.7bp
Average Position of motif in Background50.2 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCACCACACATTT--
AGCGGCACACACGCAA
 A C G T A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCACCACACATTT--
CGAAGCACACAAAATA
 A C G T A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCACCACACATTT
TTGCAACATN-----
 A C G T A C G T A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T
C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GCACCACACATTT
ATTTGCATAACAAAG--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCACCACACATTT
NWAACCACADNN--
 A C G T A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----GCACCACACATTT
NGTGGGCAT---------
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCACCACACATTT
-CTTCACACCTA-
 A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T
A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GCACCACACATTT----
GAAGTANCACGAATNMRAGT
 A C G T A C G T A C G T A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GCACCACACATTT
ATTGCATCAK------
 A C G T A C G T A C G T A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.50
Offset:-8
Orientation:reverse strand
Alignment:--------GCACCACACATTT
NNNNTTGGGCACNNCN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T G C G T A C C G T A T A G C C G T A G A T C G T C A C A G T A G C T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T A C G T A C G T