Information for 2-TCAAAGGTCCCAK (Motif 5)

A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T
Reverse Opposite:
T G C A A G C T C T A G A C T G T C A G C T G A T A G C A G T C A C G T A G C T A C G T C T A G C G T A
p-value:1e-12
log p-value:-2.984e+01
Information Content per bp:1.778
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif22.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets50.1 +/- 21.2bp
Average Position of motif in Background52.5 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCAAAGGTCCCAK
ACATCAAAGG------
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCAAAGGTCCCAK-
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Nr2f6/MA0677.1/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGGTCCCAK
GAGGTCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGGTCCCAK
GGGGTCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGGTCCCAK
GGGGTCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGGTCCCAK
GGGGTCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TCAAAGGTCCCAK
ACWTCAAAGG------
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCAAAGGTCCCAK-
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAGGTCCCAK
AAAGATCAAAGGAA----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------TCAAAGGTCCCAK
NANAGATCAAAGGGNNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A A C T G A T C G A G C T A G T C G T A C A G T C C T G A A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T A C G T A C G T