Information for 24-GGGCACCATGAAA (Motif 42)

A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A C G T A C T G A G T C A G T C A G T C
p-value:1e-5
log p-value:-1.227e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets30.7 +/- 23.9bp
Average Position of motif in Background52.8 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGGCACCATGAAA
NGTGGGCAT-------
 A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GGGCACCATGAAA
NNNNTTGGGCACNNCN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGGCACCATGAAA
NAGGTCACNNTGACC
 A C G T A C G T A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGGCACCATGAAA----
-AGAGCCATAAAATTCG
 A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGGCACCATGAAA
GTGGGCCCCA-----
 A C G T A C G T A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A
T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A A C G T A C G T A C G T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGGCACCATGAAA--
AAGGTCACGGTGACCTG
 A C G T A C G T A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.55
Offset:7
Orientation:forward strand
Alignment:GGGCACCATGAAA
-------ATTAAA
 A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

ESR2/MA0258.2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGGCACCATGAAA-
AGGTCACCCTGACCT
 A C G T A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGGCACCATGAAA---
WNAGTCADAVTGAAACTN
 A C G T A C G T A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGGCACCATGAAA
---NGCAATTAAA
 A C T G A C T G A C T G A G T C C G T A A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A
A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A