Information for 5-AACTACGCAAAGCAAT (Motif 9)

C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G A G T C A C G T A C G T C A G T A C T G A G T C T C A G C G A T C G T A A C T G A C G T C G A T
p-value:1e-13
log p-value:-3.176e+01
Information Content per bp:1.882
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.7 +/- 20.2bp
Average Position of motif in Background52.7 +/- 7.8bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AACTACGCAAAGCAAT
AAACAGACAAAGGAAT
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox5/MA0087.1/Jaspar

Match Rank:2
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:AACTACGCAAAGCAAT
---------NAACAAT
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AACTACGCAAAGCAAT
--ATATGCAAAT----
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AACTACGCAAAGCAAT
------HNRAATCAAT
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

POU3F4/MA0789.1/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AACTACGCAAAGCAAT
---TATGCAAAT----
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T A C G T

POU1F1/MA0784.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AACTACGCAAAGCAAT
-AATATGCAAATTAG-
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
A C G T C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AACTACGCAAAGCAAT
---TATGCAAAT----
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AACTACGCAAAGCAAT
---TATGCWAATBAV-
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T

CEBPG/MA0838.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AACTACGCAAAGCAAT
-ATTGCGCAAT-----
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
A C G T T C G A C A G T C A G T C T A G G A T C C T A G G A T C C T G A C G T A A G C T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AACTACGCAAAGCAAT
--TTATGCAAAT----
 C G T A G T C A A G T C A C G T C G T A A G T C A C T G A G T C G T C A C G T A C G T A C T A G A G T C C G T A G T C A A C G T
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T