Information for 7-GCCATAAAAC (Motif 5)

A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C
Reverse Opposite:
C T A G C G A T A C G T A C G T A C G T C G T A C G A T A C T G T C A G T A G C
p-value:1e-20
log p-value:-4.746e+01
Information Content per bp:1.841
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.71%
Number of Background Sequences with motif136.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets50.7 +/- 27.3bp
Average Position of motif in Background48.2 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GCCATAAAAC
AAGCCATAAAA-
 A C G T A C G T A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GCCATAAAAC
GTCATAAAAN
 A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---GCCATAAAAC---
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GCCATAAAAC
GCAATAAAA-
 A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAAAC-
NGYCATAAAWCH
 A C G T A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---GCCATAAAAC----
ACGGCCATAAAATTAAT
 A C G T A C G T A C G T A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAAAC
GGTAATAAAAA
 A C G T A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GCCATAAAAC
CCAATAAAAA
 A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAAAC
NGCAATTAAA-
 A C G T A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAAAC
NCYAATAAAA-
 A C G T A T C G A G T C G T A C C G T A A C G T T G C A C G T A C G T A C G T A G A T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T