Information for 11-CTATTAAGATTCCAGT (Motif 16)

A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
Reverse Opposite:
G C T A T A G C A C G T A C T G T C A G C G T A C G T A G A C T A T G C A C G T A C G T G T C A G C T A A C G T C T G A C T A G
p-value:1e-11
log p-value:-2.577e+01
Information Content per bp:1.778
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.4 +/- 24.7bp
Average Position of motif in Background74.2 +/- 4.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTATTAAGATTCCAGT
NTAATTAATAT------
 A C G T A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAGATTCCAGT
CTAATTAA---------
 A C G T A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTATTAAGATTCCAGT
--ATGAATATTC----
 A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTATTAAGATTCCAGT
YCATTAMC--------
 A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTATTAAGATTCCAGT
--ATGCATAATTCA--
 A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CTATTAAGATTCCAGT
AAAAACCATTAAGG-------
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTATTAAGATTCCAGT
-CATTAATTATTCAT-
 A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
A C G T G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAGATTCCAGT
GTAATTAA---------
 A C G T A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTATTAAGATTCCAGT
CTCATTAATTATGCAT-
 A C G T A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTATTAAGATTCCAGT
GGCCATTAAC--------
 A C G T A C G T A G T C A G C T C G T A C A G T A C G T G T C A C G T A A T C G C G T A C G A T C G A T A G T C G T A C C G T A A C T G C G A T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T