Information for 6-ACATGTCATAAAC (Motif 9)

G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
Reverse Opposite:
A T C G A G C T A C G T A G C T C G T A A C G T A C T G C G T A G T A C G T C A A C G T A C T G A C G T
p-value:1e-13
log p-value:-2.995e+01
Information Content per bp:1.811
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 22.2bp
Average Position of motif in Background48.0 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0085.1_Irx4/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----ACATGTCATAAAC
AATATACATGTAAAACA-
 A C G T A C G T A C G T A C G T A C G T G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----ACATGTCATAAAC
AATATACATGTAATATA-
 A C G T A C G T A C G T A C G T A C G T G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----ACATGTCATAAAC
AAAATACATGTAATACT-
 A C G T A C G T A C G T A C G T A C G T G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----ACATGTCATAAAC
AATATACATGTAAAATT-
 A C G T A C G T A C G T A C G T A C G T G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ACATGTCATAAAC-
----GTCATAAAAN
 G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C A C G T
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ACATGTCATAAAC
--AAGCCATAAAA
 G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0082.1_Irx2/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------ACATGTCATAAAC
ANTNTTACATGTATNTA--
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:ACATGTCATAAAC
----GCAATAAAA
 G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

NFIL3/MA0025.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACATGTCATAAAC
ANGTTACATAA--
 G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
C G T A A G C T T C A G A G C T A C G T C G T A A G T C C T G A C G A T G T C A C G T A A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----ACATGTCATAAAC
AAAATACATGTAAAAAT-
 A C G T A C G T A C G T A C G T A C G T G T C A G T A C C G T A A C G T A C T G C G A T G T A C C G T A C G A T C T G A C G T A C T G A T A G C
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T A C G T