Information for 3-AAGCACCYAKSWGGGT (Motif 8)

G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T
Reverse Opposite:
C G T A A G T C G T A C A T G C C G T A A T C G G T A C A G C T C T A G T A C G A C T G C G A T A C T G G T A C A C G T C G A T
p-value:1e-13
log p-value:-3.178e+01
Information Content per bp:1.755
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.7 +/- 23.3bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGCACCYAKSWGGGT
AAGCACTTAA------
 G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AAGCACCYAKSWGGGT
--GCACGTAY------
 G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AAGCACCYAKSWGGGT
MRSCACTYAA------
 G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

T/MA0009.2/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAGCACCYAKSWGGGT
TCACACCTAGGTGTGA
 G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T
G A C T T G A C C T G A A G T C C T G A G A T C T G A C G C A T C T G A A C T G C T A G A G C T C T A G G A C T A C T G C T G A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAGCACCYAKSWGGGT
--GCACGTACCC----
 G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AAGCACCYAKSWGGGT
AGCCACTCAAG-----
 G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AAGCACCYAKSWGGGT
-BGCACGTA-------
 G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AAGCACCYAKSWGGGT-
-----CACAGCAGGGGG
 G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AAGCACCYAKSWGGGT
--GCACGTNC------
 G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

TBX19/MA0804.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AAGCACCYAKSWGGGT--
TTTCACACCTAGGTGTGAAA
 A C G T A C G T G C T A C G T A A C T G A G T C C G T A A G T C A G T C A G T C C T G A A C T G A T G C C G A T A T C G A C T G A C T G G C A T A C G T A C G T
C G A T C A G T G A C T T G A C C T G A A G T C T C G A G A T C T G A C G C A T C T G A A C T G C T A G A G C T C T A G G A C T A C T G C T G A G C T A G C T A