Information for 2-AAMGCATAAAAGGRTG (Motif 6)

C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
Reverse Opposite:
A G T C G T C A G A T C G T A C G A T C A C G T A C G T C G A T A C G T C G T A C G A T A C T G T G A C A C T G A G C T A C G T
p-value:1e-16
log p-value:-3.793e+01
Information Content per bp:1.757
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.8 +/- 22.6bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAMGCATAAAAGGRTG
AAGCCATAAAA-----
 C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAMGCATAAAAGGRTG
-NCYAATAAAA-----
 C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAMGCATAAAAGGRTG
AGAGCCATAAAATTCG-
 A C G T C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AAMGCATAAAAGGRTG
-CCYMATAAAA-----
 C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAMGCATAAAAGGRTG
--GTCATAAAAN----
 C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAMGCATAAAAGGRTG
--CCAATAAAAA----
 C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AAMGCATAAAAGGRTG
--GCAATAAAA-----
 C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAMGCATAAAAGGRTG
CTACCAATAAAATTCT-
 A C G T C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AAMGCATAAAAGGRTG--
---GTATAAAAGGCGGGG
 C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAMGCATAAAAGGRTG
AAAGCTCGTAAAATTT--
 A C G T A C G T C G T A C T G A G T A C A C T G G T A C C G T A C G A T C G T A C G T A C G T A C G T A C A T G A C T G C T A G A C G T A C T G
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T A C G T