Information for 9-CCATAAAACT (Motif 5)

A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T
Reverse Opposite:
C G T A C A T G G C A T A C G T A G C T G A C T T G C A C G A T C A T G T A C G
p-value:1e-17
log p-value:-3.980e+01
Information Content per bp:1.683
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif11.71%
Number of Background Sequences with motif1945.6
Percentage of Background Sequences with motif4.04%
Average Position of motif in Targets49.1 +/- 26.2bp
Average Position of motif in Background49.6 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---CCATAAAACT
AAGCCATAAAA--
 A C G T A C G T A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----CCATAAAACT--
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--CCATAAAACT
NGYCATAAAWCH
 A C G T A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAACT
CCAATAAAAA-
 A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAACT
GCAATAAAA--
 A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAACT
CCAATAAAAC-
 A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CCATAAAACT
GTCATAAAAN-
 A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----CCATAAAACT--
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CCATAAAACT
NCYAATAAAA--
 A C G T A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----CCATAAAACT---
ACGGCCATAAAATTAAT
 A C G T A C G T A C G T A C G T A T G C G T A C C G T A A C G T C T G A T C G A G T C A C G T A G T A C G C A T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T