Information for 7-AAAGTACACA (Motif 4)

T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A
Reverse Opposite:
C G A T T C A G C G A T A C T G A C G T T C G A G T A C G A C T A G C T A C G T
p-value:1e-18
log p-value:-4.360e+01
Information Content per bp:1.783
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif5.37%
Number of Background Sequences with motif395.6
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets52.4 +/- 25.6bp
Average Position of motif in Background48.6 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:AAAGTACACA
AAAGTAAACA
 T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:forward strand
Alignment:AAAGTACACA
AAAGTAAACA
 T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-AAAGTACACA----
CAAAGTAAACANNNN
 A C G T T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa2/MA0047.2/Jaspar

Match Rank:4
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--AAAGTACACA
NCTAAGTAAACA
 A C G T A C G T T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:5
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:AAAGTACACA
WAAGTAAAYA
 T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:AAAGTACACA--
TATGTAAACANG
 T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

PB0015.1_Foxa2_1/Jaspar

Match Rank:7
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--AAAGTACACA-----
AAAAAGTAAACAAAGAC
 A C G T A C G T T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

FOXC2/MA0846.1/Jaspar

Match Rank:8
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AAAGTACACA--
TAAGTAAACAAA
 T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A A C G T A C G T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:9
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--AAAGTACACA---
NCWRWGTAAACANSV
 A C G T A C G T T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXP2/MA0593.1/Jaspar

Match Rank:10
Score:0.78
Offset:1
Orientation:forward strand
Alignment:AAAGTACACA--
-AAGTAAACAAA
 T G C A C T G A C T G A A C T G A G C T T G C A G T A C G C T A A G T C C G T A A C G T A C G T
A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A