Information for 20-CACATTGAAT (Motif 30)

A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A G T C C G T A C G T A A C G T A C T G A C G T A C T G
p-value:1e-6
log p-value:-1.439e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.7 +/- 35.4bp
Average Position of motif in Background25.5 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CACATTGAAT-----
NNNTATTGAATTGNNN
 A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CACATTGAAT---
---ATTGATTYND
 A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PB0005.1_Bbx_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CACATTGAAT--
NANTTCATTGAATTA
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CACATTGAAT---
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Esrra/MA0592.2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CACATTGAAT
ATGACCTTGAA-
 A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T
C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T

Myc/MA0147.2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CACATTGAAT
AAGCACATGG---
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CACATTGAAT
GACAATGNN-
 A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CACATTGAAT-------
-ACTATGAATGAATGAT
 A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CACATTGAAT------
-CCATTGTATGCAAAT
 A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACATTGAAT-
--ATTTGAATT
 A G T C C G T A A G T C C G T A A C G T A C G T A C T G C G T A C G T A A C G T A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T