Information for 4-GGCCAAAGTTCAG (Motif 3)

C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
Reverse Opposite:
A G T C A C G T A T C G G T C A G T C A A G T C A G C T A G C T A G C T C T A G T A C G A G T C A G T C
p-value:1e-21
log p-value:-4.954e+01
Information Content per bp:1.775
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif21.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.7 +/- 24.4bp
Average Position of motif in Background51.4 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---GGCCAAAGTTCAG
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----GGCCAAAGTTCAG
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.78
Offset:3
Orientation:forward strand
Alignment:GGCCAAAGTTCAG
---CAAAGGTCAG
 C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAAGTTCAG
GGGGTCAAAGGTCA-
 A C G T A C G T C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAAGTTCAG
TAGGGCAAAGGTCA-
 A C G T A C G T C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

Rxra/MA0512.2/Jaspar

Match Rank:6
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAAGTTCAG
GGGGTCAAAGGTCA-
 A C G T A C G T C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAAAGTTCAG
TGGGGCAAAGGTCA-
 A C G T A C G T C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAAGTTCAG
GAGGTCAAAGGTCA-
 A C G T A C G T C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GGCCAAAGTTCAG
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

RXRB/MA0855.1/Jaspar

Match Rank:10
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAAGTTCAG
GGGGTCAAAGGTCA-
 A C G T A C G T C T A G C T A G A T G C A G T C C T G A C T G A C T G A C T A G C A G T A C G T A T G C C G T A T A C G
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T