Information for 19-CCCCAGCTGA (Motif 29)

A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A
Reverse Opposite:
A C G T A G T C C T G A A C T G A G T C A C G T A C T G A C T G A C T G A C T G
p-value:1e-7
log p-value:-1.613e+01
Information Content per bp:1.959
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.4 +/- 28.3bp
Average Position of motif in Background53.4 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:CCCCAGCTGA--
--HCAGCTGDTN
 A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A A C G T A C G T
A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CCCCAGCTGA--
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CCCCAGCTGA--
--CCAGCTGTTN
 A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A A C G T A C G T
A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCCCAGCTGA-
CCCCCTGCTGTG
 A C G T A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Myog/MA0500.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCCCAGCTGA-
NNGCAGCTGTC
 A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A A C G T
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCCCAGCTGA-
NNVVCAGCTGBN
 A C G T A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A A C G T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCCCAGCTGA
CAGCAGCTGN
 A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCCCAGCTGA-
NNGCAGCTGTT
 A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A A C G T
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CCCCAGCTGA-
-CGCAGCTGCG
 A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A A C G T
A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCCCAGCTGA
-ANCAGCTG-
 A G T C A G T C A G T C A G T C C G T A A C T G A G T C A G C T A C T G C G T A
A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T